Figure 4.3: The algorithm of BIONJ is implemented in CBCTree, to reconstruct a simplified phylogram directly based only on CBCs. Output is given in Newick format that can be used as input for Treeview [6], NJplot [7] or Hyperbolic-tree [8] (i.e. HyperGeny [9]).
The input for cbcTree is the distance matrix obtained by cbcDetect. The output is a tree in Newick-format.